RnoEX0074035 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139248268-139254149:-
Coord C1 exon
chr7:139253908-139254149
Coord A exon
chr7:139248463-139248516
Coord C2 exon
chr7:139248268-139248374
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCCTACTGTCCTCAGACG
3' ss Score
8.23
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GGCTGTCCACTTTCCTCCCCCCATCACAGGTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGCTGAAGAGAATGCACCGTCCCCGGTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCAAGCTGCATCCAGGGACTTCGCTGG
Seq A exon
ACGCCACTTACCAACAGTGAGGGCTCCCTGGACTTCAGAGTGAGCCTGGAGCAG
Seq C2 exon
GCCACCACAGAGCATGTGCACAAGGCCGGGAAGCTCCTGTACCGTCATCTCTTGGCAACGTACCCTACCCTCATCCGAGACAGAAAATACCATCTGCGACTACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061016=DEP=PU(18.3=36.1)
Main Skipping Isoform:
ENSRNOT00000083182fB12151
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGAATGCACCGTCCC
R:
GCCAAGAGATGACGGTACAGG
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]