HsaALTD1007145-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000097033 | SH3GLB1
Description
SH3 domain containing GRB2 like endophilin B1 [Source:HGNC Symbol;Acc:HGNC:10833]
Coordinates
chr1:86728403-86730111:+
Coord C1 exon
chr1:86728403-86728441
Coord A exon
chr1:86728442-86728489
Coord C2 exon
chr1:86730088-86730111
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TAATTTTTAATGCTGGCTAGATT
3' ss Score
3.46
Exon sequences
Seq C1 exon
CAACTAAACTCAGCTCGCCTTGAAGGAGATAACATTATG
Seq A exon
GTAAATTTCTCTTACATGCTCAACTTCCTGCATGTAAAATGGCTGAAG
Seq C2 exon
ATTTGGGCAGAGGAGGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000097033-20-16,21-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(4.5=100)
A:
NA
C2:
PF0311413=BAR=FE(2.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAACTCAGCTCGCCTTGA
R:
TTTGTCACCTCCTCTGCCCAA
Band lengths:
60-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains