MmuALTD0012771-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144362818-144364810:-
Coord C1 exon
chr3:144364772-144364810
Coord A exon
chr3:144364724-144364771
Coord C2 exon
chr3:144362818-144362841
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TAATTTTTAATGCTGGCTAGATT
3' ss Score
3.46
Exon sequences
Seq C1 exon
CAACTAAACTCCGCCCGCCCTGAAGGAGATAACATTATG
Seq A exon
GTAAATTTCTCTTACATGCTCAACTTCCTGCATGTAAAATGGCTGAAG
Seq C2 exon
ATTTGGGCAGAGGAAGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062-6-6,7-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(4.5=100)
A:
NA
C2:
PF0311413=BAR=FE(2.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTAAACTCCGCCCGCC
R:
TTGTCACTTCCTCTGCCCAAA
Band lengths:
61-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: