RnoALTD0027408-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012957 | Sh3glb1
Description
SH3 domain -containing GRB2-like endophilin B1 [Source:RGD Symbol;Acc:1304859]
Coordinates
chr2:250724950-250726940:-
Coord C1 exon
chr2:250726902-250726940
Coord A exon
chr2:250726854-250726901
Coord C2 exon
chr2:250724950-250724973
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TAATTTTTAATGCTGGCTAGATT
3' ss Score
3.46
Exon sequences
Seq C1 exon
CAACTAAACTCGGCCCGCCCTGAAGGAGATAACATTATG
Seq A exon
GTAAATTTCTCTTACATGCTCAACTTCCTGCATGTAAAATGGCTGAAG
Seq C2 exon
ATTTGGGCAGAGGAAGTGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012957-12-12,13-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(10.2=100)
A:
NA
C2:
PF0311413=BAR=FE(2.8=100),PF146121=Ino80_Iec3=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTAAACTCGGCCCGCC
R:
TTGTCACTTCCTCTGCCCAAA
Band lengths:
61-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]