HsaALTD1013636-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]
Coordinates
chr2:152147162-152148122:-
Coord C1 exon
chr2:152148048-152148122
Coord A exon
chr2:152148024-152148047
Coord C2 exon
chr2:152147162-152147308
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCTTTCCTTTTCCTTAAAAGGCA
3' ss Score
9.22
Exon sequences
Seq C1 exon
CTTCTTGGGGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAA
Seq A exon
GTACGTGCTGTGATTAAAAATAAG
Seq C2 exon
GCACATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTGGAGTGGTCAGAAGAATTTCAGAAGGACCCTCAGTTTAGTCTGATATCTGCAACTATTAAATCTATGAAAGAAGAAGGAATTACTTTTCCTCCAGCAGGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145-10-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.4=100)
A:
NA
C2:
PF0079014=VHS=PD(28.5=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCAAACTGTGGAAAGA
R:
TCTTCTGACCACTCCACCATT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains