RnoALTD0029465-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38251595-38252896:-
Coord C1 exon
chr3:38252822-38252896
Coord A exon
chr3:38252798-38252821
Coord C2 exon
chr3:38251595-38251741
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTGTTCCTTTTTCTTAAAAGGCT
3' ss Score
8.55
Exon sequences
Seq C1 exon
CTTCTTGGAGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAA
Seq A exon
GTACGTGCTGTGATAAAAAATAAG
Seq C2 exon
GCTCATCCTAAAGTATGTGAAAAACTGAAATCTCTAATGGTAGAATGGTCAGAAGAATTCCAGAAGGACCCCCAATTTAGTCTGATATCTGCAACTATTAAGGCTATGAAAGAAGAAGGAGTTACTTTTCCTTCAGCAGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-10-6,11-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.4=100)
A:
NA
C2:
PF0079014=VHS=PD(28.5=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCGTGATTTTGCAACA
R:
AAATTGGGGGTCCTTCTGGAA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]