MmuALTD1031388-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52716425-52719795:-
Coord C1 exon
chr2:52719721-52719795
Coord A exon
chr2:52719697-52719720
Coord C2 exon
chr2:52716425-52716571
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTTTACCACTTCCCTAAAAGGCT
3' ss Score
5.22
Exon sequences
Seq C1 exon
CTTCTTGGAGCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACGGAA
Seq A exon
GTACGTTCTGTGATAAAAAATAAG
Seq C2 exon
GCTCATCCTAAAGTATGTGAAAAACTAAAATCTCTAATGGTGGAATGGTCAGAAGAATTCCAGAAGGACCCCCAATTTAGTCTGATATCTGCAACTATTAAGTCTATGAAAGAAGAAGGGGTTACTTTTCCTTCCGCAGGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-9-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.4=100)
A:
NA
C2:
PF0079014=VHS=PD(3.0=4.1),PF0079014=VHS=PD(95.1=79.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCGTGATTTTGCAACGG
R:
ACTAAATTGGGGGTCCTTCTGGA
Band lengths:
104-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types