HsaALTD1014087-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:174676337-174677124:-
Coord C1 exon
chr2:174677045-174677124
Coord A exon
chr2:174677028-174677044
Coord C2 exon
chr2:174676337-174676666
Length
17 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AGTTCAACTCTTTTGCCCAGGAG
3' ss Score
3.73
Exon sequences
Seq C1 exon
GCTGGAGTGCAGTGGTGCCATCAGTTCGCTGCAGCCTCGACTTCCCAGGCCCAAATGATCCTCCTACCTTAGCCTCCCAA
Seq A exon
GTAAGCTCGGATAACAG
Seq C2 exon
GAGTTTTGCATCCCTTGCTTTGGCTGAGAAGAGGATAAAACCTAGAAAGAAGTCTAAGCAAGACCGGGTGTGGTGGCTCACTCCTGTAACCCCAGCACTTTGGGAGGCCAAGGTGAGAGGATGGCTTGAGTCCAGGAGTTCAAGAACAGCCTGAGCAGCATGGCAAAACCCCATCTCTACACAAAATACAAAAATTAGCTGGACGTCGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGACTGAGGTGGATCACTCAAGCCTAGGGAAGTGGAACTGTGATTACACCACTGCACTCCATCCTGGGCAACAGAGTGAGACCCTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTACCTTAGCCTCCCA
R:
TTACAGGAGTGAGCCACCACA
Band lengths:
111-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains