HsaEX0071520 @ hg38
Exon Skipping
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:174585523-174682916:-
Coord C1 exon
chr2:174682774-174682916
Coord A exon
chr2:174597601-174597858
Coord C2 exon
chr2:174585523-174585611
Length
258 bp
Sequences
Splice sites
3' ss Seq
TCTAGTTTCTTTTTCTGCAGCAA
3' ss Score
7.19
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAGTTCCCGGATGGTCGCAGCCTCCCGGCGCTGAGCGCTTTTCCTGCCCGCCCGGCTCAGCCCTGCGGACCCCGGGAGAAGTTTCCCAGAAAAAATGCCCAGCGCGGCGCGGGGCTGCGGAGTCGTCCGGAGCCGCTGCGCG
Seq A exon
CAAAGGAGGAAGGAACAACAAACAACAAATTAATCAGACAGGAAGCGAATAACCACAGAAGGACGTCTGCCTCTGACTCAGTATGTCACATTTAACAAGAGGCCAGAGCTTGTCCAAAATGGCTGTCCAAAAACGACCCCACACTTGCGTTAGAAGATGATACCTTTTTCAGGGACAGTTTTCTCTCTTGGCTCCTGTCCCGCTGGCCCTCTGTCTGCCTGTGTCCCTGACCATGGCTCCCTGCAGTACCCTTTAACG
Seq C2 exon
ATTTATCAGCAAGACTGTTGAACGCATAACTGCCCAAGATGCCTGTCCCTCCCCCTCCAGCACCCCCGCCGCCCCCGACGTTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935_MULTIEX1-9/9=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.1=94.1),PF062736=eIF-4B=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCCCGGATGGTCGC
R:
CAGTGCAAACGTCGGGGG
Band lengths:
232-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development