HsaEX1002015 @ hg38
Exon Skipping
Gene
ENSG00000236449 | AC018890.6
Description
NA
Coordinates
chr2:174547369-174656285:+
Coord C1 exon
chr2:174547369-174547477
Coord A exon
chr2:174649750-174649893
Coord C2 exon
chr2:174655498-174656285
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTCTTCTCCCAAGGCT
3' ss Score
8.14
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTGGAACAAATCATGGTAGTAAAATGGCGGCAGAGAGCTAGTAATGTGTCTGCAATTGGTGGGTTCTTGGTCGCACTGACTTCAAGAATGAAGCCGCGGACCCTCACG
Seq A exon
GCTACTCCTGACTGACCATCACATAAAAGAATACAAAACAATCTGAAAGTCAACCAAGGAAATAGTAATCAAGAATAATTCTGAATAGACGTAATTTCTACTTTATGCATGACTGTAAACCTTAACTTCACTGAACTAGACCAG
Seq C2 exon
GTATGACAGCTCCTCTCCCAACAGCTCTACTTTCTACATCTACTCTCTACCACCACAAAACTTCTTTCAGTTCCATGAAAGGGCCATGTTTTTCTGGTCTCTTGGCCTAGGAGCATGTTGTTCTTCTGCCAGCAACCTTCTTCAACCATCTCCACAGGATGACTCCTCTATTGGATACTTCCATGAAAAGTCCAGGCCTGGGTTATGTACCCTTCCCAAAGTGCACCCCAGACACCCAACAGTTTTTCCAGCCCAGACTCACCACACTGTGTGGTAATTTCCTGATCACTCAGTTGTGCTCCCCACAGACTATAAGCTCTATGAGGGCAGGGGCCACAGTTTGCTTGTTCACTACTATATGCTCAGTACCTGGTAAATATTAGTTGACTGAAGAATGACTATGTGGTAATCTATTCCATTGGTGGCCTCCAGTGAACCATGTCTTCTGGTATTTACATCTTGTGTGGTCCCCTCCATTAAATTTGGGCTTTAACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236449-'1-13,'1-12,2-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATTGGTGGGTTCTTGGT
R:
CAGGCCTGGACTTTTCATGGA
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains