HsaINT0182991 @ hg38
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:174567861-174572446:-
Coord C1 exon
chr2:174571676-174572446
Coord A exon
chr2:174568074-174571675
Coord C2 exon
chr2:174567861-174568073
Length
3602 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AGTGTCTTTTTTTGCTCCAGGCC
3' ss Score
9.56
Exon sequences
Seq C1 exon
ATTCTGGAGGAAGCCGACCACCATTGTTGCCACCGGGAGGAAGATCCACATCTGCGAAACCCTTTTCACCCCCAAGTGGCCCAGGGAGGTTTCCTGTGCCTTCTCCAGGCCACAGAAGTGGTCCCCCAGAGCCTCAGAGGAACCGAATGCCGCCCCCAAGGCCCGACGTGGGCTCAAAGCCTGATAGCATTCCTCCTCCAGTACCTAGTACTCCAAGACCCATTCAATCAAGTCCGCACAACCGGGGGTCCCCACCAGTGCCCGGAGGCCCCAGGCAGCCCAGCCCCGGGCCCACTCCTCCCCCTTTCCCTGGAAACCGCGGCACTGCTTTGGGAGGAGGCTCAATACGTCAGTCCCCCTTGAGCTCCTCCTCGCCCTTCTCCAACCGGCCTCCCCTGCCGCCTACCCCCAGCAGGGCCTTGGATGACAAACCCCCTCCACCACCTCCTCCAGTGGGCAACAGGCCCTCCATCCACAGGGAAGCGGTTCCCCCTCCTCCTCCTCAGAACAACAAGCCTCCAGTGCCTTCCACTCCGCGGCCTTCGGCCTCCTCACAGGCCCCACCTCCGCCGCCACCTCCCAGCAGGCCCGGGCCGCCTCCTCTGCCTCCAAGTTCCAGCGGCAATGACGAAACCCCAAGACTCCCACAGCGGAATCTGTCCCTCAGTTCGTCCACGCCCCCGTTACCTTCGCCAGGACGTTCAGGTCCTCTTCCTCCCCCGCCCAGTGAGAGACCCCCACCTCCAGTGAGGGACCCGCCAGGCCGATCAG
Seq A exon
GTATGACAAGACGTGGAGTGAGTTGCTTCCAAAACCCAGCCTGCCCAAATGTACCAATAATCCTGTCAGTCAAGATAGTCTAACAAAAGCAGGCATAAGTAAACTCAGACTGCTTTGTGCTTTTAAGTGGCACACGACACGTGTGATCGTGACCTCGTGTAAACCCCGGGGGAAAGTGGGACCAATATTTCTGTTGGTGTTTTAGAGATGAGGACACTGAGTAGCTAATAAAGTTAAATGGTCACGAGCTAGTTAATAAAGAAGAGGCAAGAACTTTCATCTTCCATCTCTGAAGTGTACTTGCCAGTCCACTACCCTGCCTCCCTAGAGAGAATTTCGGCGGTCTTAATTGGGAAAATAAGTCCCCACCTCCCGCAGGAGGGCTCTGTTATTCCAACAAGAGGGGAAGTTCTTCAAGAGCTAATGAACTTCTCCTGTACTTCTCTCTTCATTCGCCAGGCTTTGAGGCCATTTCCCTATTCATTAAAGACTAATGTTTAAAAAGTCCATTTTGCTCTTTGTAATCTCTGGTACATAAATCCCTTGGAGAATCAAATAAAGGTATAGACTATCTTTACAAAAATACTCAGGCATAAACTCAAAATTTGCCTGCTGTCACATGGCTTGAAGAGCCTGCTGAAGCCCATCTGAGACCCTTCCAATGCCCCCATCCACAGTTGAGAAACCTTGATCTGAGGGACAAACTTTCAGAGTATGAAAGGAAATGTGAGGATTGCCTAGAGTTTGCCCTCTCCGAATTATAATAGGCATTTTTAGTAGAATATGCTCACTTGATGCGTTTTATAGTGGTTATGGATGAACTCAGTAGAACCACCCACTTTTAAAATTGAATCTCATCGTACAGACCTTATTATGTCTGGAAATGGGGCATTTTTTTCCTTTACGCAGAGATAAGAGACCTTTGACCCTGTGACCTCAGGAACCTCATAATCACCATTCTTTAAACTTGCTCACGTACTGGAATCATCTGCGGAGCTTTAAAAACCACCAATGCCTGGGTCCCTTCCCGGAGTCTCTGGCATAATTGGTCTGGGGTGCAGACTGGGAATCAGGATATTTAAAAGCTCCCTGGTGATTATAGTGTGCAGCAGAATGTGAGAACCACACCTTGAAACCATTGTGCCATGGCCCTACCAAATGGATGAGTCAGCAGATTAAATCTTCCCCAAAATATGACAGGCATTGACATATAACATTTATTATTTCTTTTGATTACGTAAGTCATACTTGTTTATTATAGAAATACTGAAAAATATAAAGAAAATTAAAATTAATCCTTCTACCACCACTATCCAGAAATAATCATTGATAACATTCTTTTAATGTGTCCTTTCAGTCTTTTTAAAATGCATGTTTTTACAAACTTGGTATCCCACTACATATATTGTTTGCTAATTTGCTTTTTATTTAACAGTATCTCATTAATGTTTGCTGATATGATTATTCTACAGCCTGACTTGTAACAGCTACCTAATATTAAATCCTACAAATGTACCTTGATTTATTTAACCAATCCCCTCACTTGGTCATATGGGCCATCTCTAGATTTTTCCTGTTGCAGATAATGCAGTGATATATTTTTGTAGCAAAATATGTGTACACATCTCTGTATTTCCTTTGGATTAATTCCTATAAGTGGAATATCTGGGTCAGTGAGTGTGCATAGTAAACTATGGATTTCAATAGGTACTGCCAAATTGCCTTCCAGGAATTTCCTACCAATTTACATTCCCACAAGGAGCGTATGAGAGTTCATCAAAGGCCCTGTGTATTCTGAGTTGTTTGGCTTCAGTGTTATGGGGAGTGGGCCTTGGAATCTAATAGATTTGGAGTCAGATCCTGGCTCCTCCACTCAGTCTTCTGATGAGCTTTTCAAGCTTCCAAAACCTCTGAGGCCTTGTCTCCTATCCCTGTACCTCTCAGAGTTGTTATAAGAATTAAATGAGACAAGCATGTATAGTGGTTATCTTATTTCCTGGCATATAGTTATATTCAATAAATGATCATTTCTGTTATTCTGCCAGTGGGAAATAGAAATCTGTTTTCTTTTCTATTGTGCCTGCCAGGATTTGGAGCAGGGTGCCACAAGGTTGGAGAGTTAGGAACATGAACATGACCATTTACTTTAAAAAGAAAATGAGATGAAGTTACGTAGTACAGGGCCCCATAATATTGGAAGTTGAGTTTGCATGTAGTGACAGTTGTGTGGTGGTATCACCAATGAAGTTAAAACCACAGCAAATGAGACACTTTTCCTCAGTAAATCAACTCTTGCTGCCTGGGACTCCAGCAATGACAAGCAGATAGGGTAATAAATAACCACTCCCAGGTGAGGCACTGAAGACTCCTTGAGAGACCAATCAGGGCTGGGCAGTGCCTCCCACCTCTGTAAAATGTTGGAGCCAAGACTTTCTGTCAGGGATATCTGCAGTGGGCAGGTTGTTCAGTTTAAGGTTCCTAATTGGATTCTGAATCTATAGCTAATAAGATATTTATTTATAGCACCTTAAGACATTGTATTCACATAAAATGTCAGCATCTTACAAGCGGAACACACTGCTGAAGAGCAGGCATAATTACTAAGGCCATTTTGATTTACATTGGAAAATGCTCAAGTTTTTGGTTTTGTTTTTTTTAATTTACTTACTACTCAAATAGCCCCTGCATTTGGAGGATAGGAAAAGCAAGATGGTTTTCTTTTGTATTATCAAAAAAATTTCCTTGAATTTTTCTTAGAAACTTAAAAACTTATGGTTATACCATACTGCTACATTTTTTTAAAAAATGGTTTCAAGTACTTACATAGTATTTTTTATTTGCATTTTCACTAGTTTTTCCTGGCAGCAGTGCTGTGAGACAGGTGACCATCTGGCACTCTTTTACAGCTAGGAAACCAAGTTCCATAGGGTACCAGCTTGCTCAGGGTCAAGATTCACATTAGCATTTATAGCCATGGATGTTGATTAGCTGTTTGTCACTCCCTGTGTTTATCTGCCTCCCCAAAGAGGAAGAACCAAGAAGAAACTCTTACTGCTCTCAGGATGACTGGTATTTGGTTTCCTGATGCCACTTCTGCCTGGAAACAGATCATATACATCACAGAAACATGCTTCTGTAATTAACAACAAAACTATGCATTTAAAGAACTTTGTTCTTCTGAAGACCTAAAATAATTTCATAACTATCTTATTCTTTTTAAAAAAATTCTTTCATCATGTCACAGTAATTAGTTCAATAGCTCTTTAAAGGATTATAAAATGTTTTTTTAAATATACGGTTGTCCGTGTAAACAGATTTTCACCTGTTTTCAATTTCACTGTGCCATCTCCAATCTGAGTGCTAATTCAAAGCCAAAACACCCATTTAGCTATCAGTATGCACTTGTTTTGCATATACATGTGTACACATGTGCAATTTTTGTGTTTCTGTGTGTTTACTCATTTCTCAGCCAAATATCCTAGAAAATCACCCTAATTAAAGGGCATGTGTCCAGCAAGTCCTCATCAGCTGTACACCAATGGTGACCACGGTAATGGAATGTGGATGTAAGGTTCTGCACTAAGTGTCTTTTTTTGCTCCAG
Seq C2 exon
GCCCCCTCCCACCACCTCCTCCAGTAAGCAGAAACGGCAGCACATCTCGGGCCCTGCCTGCTACCCCTCAGTTGCCATCCAGGAGTGGAGTAGACAGTCCCAGGAGTGGACCCAGGCCTCCCCTTCCTCCTGATAGGCCCAGTGCTGGGGCACCTCCCCCACCTCCACCATCAACATCTATTAGAAATGGCTTCCAAGACTCTCCATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935:ENST00000392547:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.999 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains