RnoINT0165604 @ rn6
Intron Retention
Gene
ENSRNOG00000018406 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:RGD Symbol;Acc:620887]
Coordinates
chr3:60155988-60158824:-
Coord C1 exon
chr3:60158090-60158824
Coord A exon
chr3:60156140-60158089
Coord C2 exon
chr3:60155988-60156139
Length
1950 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGCCTTGTCTTTTGCTCTAGGCC
3' ss Score
11.59
Exon sequences
Seq C1 exon
ATTCTGGGGGAAGCCGACCACCGATTTTGCCACCAGGAGGAAGAGCCACATCTGCCAAGCCCTTTTCACCCCCAAGTGGCCCGGGGAGGTTTCCCGCACCCTCACCAGGCCACAGGAGTGGGCCCCCAGAGCCGCCCAGGAACAGAATGCCTCCCCCGAGGCCTGATGTGGGCTCAAAACCAGATAGCCTTCCCCCTCCGGTACCAAATACGCCAAGACCCATTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCCCCCAGACCCCCCTTTCCCGGAAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGTGCGCCAGAACCTCTCGAGCTCCTCCTCTCCGTTCCCCAGGCCCCCTTTGCCCCCGACCCCAAGCCGGGCCTTGGATGACAAGCCCCCTCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTTCCCCCTCCCCCATCACAAAACAGCAAACCTCCAGTGCCTTCCACCCCGCGGCCGGGGGCGGGTTCACAGGCACCACCTCCGCCACCGCCCAGCCGGCCAGGACCCCCTCCACTGCCTCCGACTTCCAGCGACGAGATCCCCAGGCTGCCACAGCGGAACCTGTCCCTCACCTCCCCTACACCTCCCTTGCCTTCACCTGGACGCTCGGGGCCTCTCCCTCCCCCACCCACCGAGAGGCCCCCTCCTCCCGTGAGGGATCCGCCAGGCAGATCAG
Seq A exon
GTATGGCAAGACTGGGGGTGTCAGGTCCCCAAAACCCTGCTCTCCTAAATGTCTCAAACAAAAACATAAAGCCGTGGATGCTGCTCCATACTGATGGTGTAATGTCACGGTGGGGGCGTGGACATCTCATAAAAGGGACCAGATAGTTTGTGTCTCAGAATCGAGCTGACCTGGTCACTTTTGAGAGTGAAAAGGGAGGGACTTTCATCTTCCACCCTTCCTCTAAAGGGAAGCTGGGCTGTCTTGGTTAGAAATAAGGTCCCATGAGAGTACTAAAGGCAAGGCAGTGACATCACTACCAGAATTAACTATTTCTCTCTCCCTAAGCCAGGCTTTGAGTCCACTTCTCTGCCCATTAAAGATAAATCTTTAAAAAACCCAGTTCAGGCGAGCTAGAGAGGTGGCATGCTCAGAGGTTAAGAGCACCTTGAGCAGTACAAACAAATATCCAGTCAGAGGCCTTAGCCTCAGCTCAGGGAGCTGCAGGAGACCAGCTGCAGGTGCCCAGGTTCAGGAAGGAACTCGTACTTCACAAATAACATTTTTTTTTTAGAAAATGGTTTCAAATGTGTTGGTAATATGATTACATCTTTTTTATATCTAAATAGTTTTGAGACAGGCCCTCACTATGTAGCCCTGGCTGGCCTGGAACTCTTTTTGTAGACTAGGCTAGCCTTAAACTCATAAAGATCTACTTCTCTGCCTCCAAAGTGCTGGTTTGTATGTAGTACTTTTAGTTTGCTTTTTCAGTTATTGCTCCTGGCACCACTGTGACAGAGGTGACAACTACCTTACTTTTGGTAGTCAGGGACCGAAGCTCCACAGCCAGCAGCACATTCAGAAGCTGTAGCCACCACCTACTGTCTGTAATGGGAGAGTAAGATCAGCGGTCTCTCTCTCCCTGTGCTTCTCCACTTACCACACCACACCACACACACACACACACACACACACACACACATATACACTCCACATATACCACACACACACACCACATATACCACACATACACACACAAACTACACACCACACACATAAACACACACCACACACATAAACACACACCACACATACACCACACACACACTCACCACTTATACCACACATACACATACACACTCACCACATATATCACACATACACACACACACACACACACACACACACACAGAGGAATCAGCAAGAAGTGACTGCTGTGGGTCTCCAAGTAACCAGTGTTTGGTTCTTAGTGTCATTTGTGTCTGAGCACAGAATCCAGTGCACTACAGAAATATGCTTGTGTAATTTGCCATAATACTGCACACACACACATAAAAACTTAGTACTGGACCAGTGAGACAATGGGCTCGGCCAGTAAGAATATTTGTGACTTGAGCCTGATGACCCCTGGAATCCAGGTGAAGGTAGAAAGCAAAAATAAACTTTCTAAAGTTGCTCTCTGACCTACACACAGGCACACACACAAAATTTAAATTTTTTAGTTTAAAAAACTTAGTTTTTCTGAAGACCTAAACTAACTTTATAACTATCTTACTCCTTTTAAACGATTCTTTGGAGGTATCAGAATAACTAGTTCAATAAGTCTTTAAAAGGATAAAATGTTTTTTCAATGGCATGGTTGTCAATATAAATAATTACCTGTTTCCAGTTTCACTGTTTGGTCCCCAGCCTCGGTGGTTACTTGAAGCCAGAGAGCCAGTTAGCGGTTGTTCTATGGCCTTAGTTTACATATCCACCGGGTGTATGCCCCCTTCCTGTTTGTGTCTGTGTCCAGAAGGGCTCCACCATTTCTCCTTTCCCCTAGTTCAAGGGTGTGTATTCAGCAGGAACTCCGCCTTGCACAGTGATAATGACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAAAGCAGTGCTTCACTAGATGCCTTGTCTTTTGCTCTAG
Seq C2 exon
GCCCCCTCCCACCACCACCTCCAATAAACAGAAATGGAAGCACAGCTCGGGCCCTGCCTGCCACCCCTCAGTTGCCATCCAGGAGTGGAATGGACAGTCCCAGAAGTGGGCCTAGGCCTCCTCTTCCTCCTGACAGGCCTGGTGCTGGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018406:ENSRNOT00000024922:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF071726=GRP=PD(2.9=1.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCATCACAAAACAGCA
R:
CACTCCTGGATGGCAACTGAG
Band lengths:
357-2307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]