DreINT0175769 @ danRer10
Intron Retention
Gene
ENSDARG00000071084 | wipf1b
Description
WAS/WASL interacting protein family, member 1b [Source:ZFIN;Acc:ZDB-GENE-110815-1]
Coordinates
chr6:10552053-10553090:-
Coord C1 exon
chr6:10552341-10553090
Coord A exon
chr6:10552260-10552340
Coord C2 exon
chr6:10552053-10552259
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ATTTGTGTTTGCATCCACAGGTC
3' ss Score
11.05
Exon sequences
Seq C1 exon
ACTCTGTGAGTGTCAGGCCTCCGGTTCTGCCACCTGTAGCTCGTACCACAGGTCCGCGGCCTTTTGGTGGAGGATCTGGCTCTGCCCCTCGTCTGCCTGTGCAGCGCAGTGAATCTTTTGATCCTCCACGGGCACGAATGACTCCACCACGTCCCGAAACGCCAGGAGGGCCTCCTCCTCCTCTTCCAAGTGCCCCCCGACCCTTCCAGAGCAGTACACAGAGCAGGGGGCCACCCGCACTACCAGGCACTCCCCGCTTTGGCTCTGCACCAACCCCTCCACCCCCAACCCTTCCTGGGCGTCAGCCTGCACCTCCACCAGTGCCAGGTGGGATAGGTCGTCCTCCATCAGTTCCTTCTCCTTCGACTGGTCATGCCGGAAGGCCTCCACCTCCTCCTGCACCTGGTCGGGGTGAAGACCGCCCTCCTCCTGTTCCCCCTGCAAACCGCTCAATGCCACTGACGCGGGACAGCCCTCCCCCTCCACCTCCTCCATCAGCAAGCAGTAAACCGACTCCCCCTCCAGCTCCTTCTCCTGCCTGCTTGAGGCCACCGGTGAGTGCAGCCCCTCCACTGCCGCCAGGTCGCCCAAGCCCAAATACTCCAGATGAACATACGCCACGACTTCCTGAACGAAACCTGTCACTAGCCTCACATCCGCCCGCACCTCCGCCAGGGCGATCCGGACCCCTTCCTCCACCTCCCTCCGAGAGACCGCCTGCGCTGGGCAGAAATGCAAGTGGAAGATCAG
Seq A exon
GTATTGAAGGAGGTGCAGGTTTTTACAGGATGATCCCAAAATCGTCTTTTTGGTCATCTGTATTTGTGTTTGCATCCACAG
Seq C2 exon
GTCCTCTTCCGCCTCCACCTCCTTCTGGCCGGCCAGGAGGAGGAAGTATGAGGTCATCGCCAGCTCCTCCCCCACCAAACAGACCGGGTGTAGAGACTCACCGTGGGGGCAGTAGGCCACCACTTCCTCCAGACAGACCTTCCTCTGGACCTCTGCCGCCACCTCCTGCACCTATAGGCAATGGATACCACAGTCAGCATCATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071084:ENSDART00000151661:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAGAAATGCAAGTGGA
R:
GGTCTGTCTGGAGGAAGTGGT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]