BtaINT0162182 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001585 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:22278966-22283944:+
Coord C1 exon
chr2:22278966-22279736
Coord A exon
chr2:22279737-22283728
Coord C2 exon
chr2:22283729-22283944
Length
3992 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCATTTTTCTTTGTCTTCAGGCC
3' ss Score
11.05
Exon sequences
Seq C1 exon
AGTCCGGAGGAAGCCGACCTCCAATCTTGCCACCAGGAGGAAGAGCCACATCCGCCAAACCTTTCACACCCCCAAGCGGCCCAGGGAGGTTCCCTGTGCCTCCTGCAGGCCACAGAAGCGGACCCCCAGAGCCTCAGAGGAACCGAATGCCTCCCCCGAGACCCGAAGTGGGCGCAAAGCCTGATAACATCCCCCCTCCAGTGCCTAATACTCCAAGACCCAGTCAGTCAAGTCTGCACAACCGGGGGACCCCCCTAGTGCTGGGGGCTCCCCGGCAGTCCAGTCCTGGGCTGACCCCTCCCCCTTTCCCCGGAAACCGAGGTGCTGCTTTCGGAGGAGGCTCCATCCGTCACACCCCCTCAGGCTCCTCCACGCCTTTCTCCACTAGGCCTCCCCTGCCTCCTACTCCGAGCAGGGCCTTGGATGACAAGCCCCCTCCTCCGCCTCCTCCGGTGGGCAACAGACCCTCCATCCACAGGGAGTCGGTGCCGCTGCCTCCCCCTCAGAACAGCAAGCCCCCGGTGCCGTCCACCCCGCGGCCGTCCTCCTCCTCGCAGGCCCCGCCGCCTCCGCCCCCCAGCCGGCCGGGCCCTCCTCCGCTGCCCCCCGTGTCCAGCGGCAGTGGCGACGAAATCCCGAGGCTCCCGCAGAGGAACGTGTCCCTGTCGTCGTCGGCGCCTCCTTTACCTTCATCAGGACGGTCGGGCCCTCTTCCACCCCCGCCCAGTGAGAGACCCCCTCCTCCGGTGAGGGACCCACCGGGCAGATCAG
Seq A exon
GTATGGCCAGATCGGACCGCGGTGAGCTGTTCCCCTGCCTCCCAGCCAGCCCACATGTCACCATCAAGCTCAGAGGAGGGGAGCCTGACAAGGGCTTCAATGAACCCTCAGACTGCTCTGACCTTTGAAGACACATAGCCCATGTGACTTCCTCTTGACCTCCCTTAAATCTCTGAGGAGAGTGCAGGCCAATATTTCTGTCCATGTTTTAAAAGTGAGGTGACTGTGTAACTAATGAAGTGAAATGATCCCAAGTGAGTTAAATTAAGAATAGGCAACTCACCTTCCATCTGAAGTTCTGCCTCCTCTCCTGGAAGGGAATTTCTGCTGTCTTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCCACTGTATGACCCCATAGAGGGCAGCCCACCAGGCTCCCCCTTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTGCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGATGGGAACTAAATTCCCATCTCCAGCAGGAGGGCCCATTATTCCAAGAAGGGCAGTTTAAGAGCAAGTGAACTTCTGTACTACTTCTCTTCATTGGTCAAGCTTTGAGGCCACTTCCATGCTCAGTAAAGTCACAGCAGAGTCCATTTTGCTATCTGTTCATGTCTTGGGCACAGAGATCCCTTGTAGAGTTAGGTAAAGGTATAAGGCCTATAAGGCCACCTTCTCTCCATAAAAATGCTCATAAGCATAAACTCAATTTGCCTGCTGTTTCATGGTTGAGGACCTACTGAAGCCCTTCTGTGTCCACACCCAGGGCTGAGAAACCTGGATCTAAGGGCAGAACCTTCACAGTATACGAAGTGTGAGGAGTTTGTATCTCTCTCCTACTTGTGATAGTTGCTTTTTTGTTTTCTGTTGGTTATTGACAGATTAAAAAGTTACCTCATTTTTAAATTTAACCATACATGTTAAATTGTATGGATGTTTGGAAATGGGTCATTTTTTTCTGTGAGAAGCTGACTGACTTTTCTTGCTCTGACATCAAGAACCTAATAAACACCATTTTTTCACCAGTAATCCTCAAACTTGACCACATACTGGAATCACCTGGTGAGCTTTAAAAATGATGATGCCTGGGTTTGTACCCCAGGGTTTCTGGTTTGATTTGTCTGGGTTGAAAACTGGGCACCAGGATATGAGGGAGCTCCCCAGTGACTGTAACGTGTCACAAAGTTTGAGAACCACTCCTTCAAACCACTTTGCCAGGGAGAGTCAGCTACAAATACAAAAAGTGGCTAGTCTATTCAGTCTAGACACGGTGTCATCTCATTAAGGATGCTTCAGAGAACAAATAAGAACAACAGTCAGATGAATGAAGTGTGTTGTTTTCTCATTATCCAAAACCCCCAGCGTGGTTGAGGAGCTATCTTCTTCTACCAAATGACTGAATCAACAGATTAAATATTCCCCAAAGTAGGATAGGCAGTGATACATATTTGTTGTTTCTTTCAATTACATAAGTCATACCTATTTATTATAGAAATGCATAAAAGAATAAAAGAAAATAAAAATCATCTATAATTCTGCCATCACCAACATTTAGATGTAACATTTTTTAGATACCCTTTTTTAAATGCATGTATATCAAAGTTTGCAAAATCAGTATCAGTTGGCTAATTTGCTTTTATTTAACAGTATCTCACTAACATTTTCTTGATATGATTAACTGTTCTTTTACAACCTGACTTATAATGGCTGCATAATATTAAATCCCACATGAGTACCTTGGCTTATTTATTAGTCAATGTGTTCATACAGGCCATCTCTAGAGTTTTGCTGTTGCAGATAATTCAGAGATACATTCTTAGAGCTAAATATTTGTGCACACCTCTGTGTATTTCTTTTGGAAAAATTTCTAGGAATGGGATTTCTAGGACAATGGATATGCCTAGTAAACTATGGATTTCATAGGTATTGCCAAATAGGCCTCTAAAAATACCCACCAATTTACGTTTCCACAGGGAACCTATGAGTAGTTGTCAAGGGCCATCTATATTTTCAGAGGAGGTTTGGCTTCATTGTTAAGGGAGTGCTTTAGAATTTGACAGAATGGAGTCATATCCTATTCTTGCATTCACTAGCTTCCTGACTTGAGGTTTTAATCTTCCAGTATTTCTGAGGCCTTGCCTGCTATCCTGACACTCCTCAGGGTTATCATCAGAATTAAATGAGACAAGTGTGTAAAGTAGTTGTCTTATTTCCCTGCATGTAGTTCAGTTCAGTTGCTCAGTCTTGTCTGACTCTTTGCGACCCCATGGACTGCAGCACATCAGGCCTTCCTGTCCATCACCAACTCCTGGAGTTTACTCAAACTCATGTCCATTGAGTCAGTGATGCCATCCAACCATCTCGTCCTCTGACGTCCCCTTCTCCTCCTGCCTTTAATCTTTCCCAGCATCAGGGTCGTTTCAAATGAGTCAGTTCTTCACCGCAGGTGGCCAAAGTATTGGAGTTTCAGCATCAGTCCTTCAAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGAAATTCACAAGAGTCAATGATCGTTTTTATTATTATGCTGCCAGCAGGAAATAGAAATCTGTTTTCTTTTCTGTTATGCTTGCCTAGGTTTGTATCTTGGGGCTAAAAGGTTGGACAGTTAGGAACATGAACAGTTACTTTTAAAGAGAGATGTTGGGGTTGATGAGGTTACGCAGTACCAGGTCCCATAGTATTGGAAGTCTAGTTTGCATTTAGTGACAGTATGAGGTAGTACTACCACTGCCTTTAAGCCCACAGCATATGAGCCACTTCTTCCCCCAATGAATCTACTTATACTGACTGGGACTCCAGCTTTGAGAAGCAGATCAGGCAATAAATAAACCCTGCCAGATGGGGCACTGAAGACTCCTTGAGATGAACCAGGGCTAGGTGTGCCTCCCACCTCCATTAGGGATCTGAGCCAAGACTTCCAGGCAGGAATATCTTACATGGGTGGGTCATTCAGTATAAGGCCCTCTAGTTGGATTTTGAATCTGTAGTTAACAAAAGATATTTATACTTATAGCACCATAAGATGTTGTGTTTACATAAAATGTCAGCATCTTGCTAGTGGAACACAGTGCTGAAAATCAGGCATAACTACTAAGGCCATTTTGATTTGCATGAGAAATGCTCAAGTTCCTTTTATATGCTTTTTGACTATTTCTGGCAACAGTGCAGTGAGAAAGGTGCTCTTTTGTAGACAGGAAATCAAATTCCATAGGATAATCAGCTTGTGTGGGGTCAGTGTCCTGCAGTAGCATTTATAACCATACACATTGATTAGCTGACTGTCACTCCCTGTGTTAATCTGCCTCCCCAGATTAAGAGGAAGAACCAAGAAGGAACTCCTGCTCATCTCAGGATGGCAGATATTTGGTTTCCTGATCCCACTTCTGTCTGGAAATAGATCATATGCATCACAGAAACATGCTTGTATAATTAGCAATAATACTCTGCATTTAAAAAGTTAATTCCTCTGGAGACCTAAAATAAGTTCATAACTATCTTATTTTTAAAATATTTACTTAATAAGTAGTATGTCACAGAAACTAGTTCAATAGCTGTTTATAAGGAATTTTAAATGTTTTTAAAGTACACAGTTGTCACTATAAACAAATGATTACCTGTTCTCAACTACATCATCTCCAATCTCAATACTGACTCAAAGCCAAATAGCCAGTTAGCCATCAGTGTGCATTTGTTCCACATGTGTGTACATTTGTGCATTTTTGTGTTTATATGTGCCTCATTTCTTGACTAAAGCTCCTAGGAAGTCTCCACCATTTCTCTCTTTTCTCAAGTAAAAGGGCATGTATCCAGCAGGCACTCCGTAACTGCATGTTGATGGTAGTAGTAACATGGTATGTAAGGTAGAGCAATAAATGTCATTTTTCTTTGTCTTCAG
Seq C2 exon
GCCCTCTCCCACCACCTCCTCCAACGAACAGAAACGGCAGCACATCTCGGGCCCTGCCCGCCACCCCTCAGTTGCCGTCCAGGAGTGGAATAGATTCTAGTCCCAGAAGTGGGCCCCGGCCTCCCCTTCCTCCCGAAAGGCCTGGCACTGGGGCACCTCCCCCACCTCCACCATCAACATCAATTAGAAACGGCTTCCAAGATTCTTCATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001585:ENSBTAT00000002076:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]