HsaINT0182991 @ hg19
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175432589-175437174:-
Coord C1 exon
chr2:175436404-175437174
Coord A exon
chr2:175432802-175436403
Coord C2 exon
chr2:175432589-175432801
Length
3602 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AGTGTCTTTTTTTGCTCCAGGCC
3' ss Score
9.56
Exon sequences
Seq C1 exon
ATTCTGGAGGAAGCCGACCACCATTGTTGCCACCGGGAGGAAGATCCACATCTGCGAAACCCTTTTCACCCCCAAGTGGCCCAGGGAGGTTTCCTGTGCCTTCTCCAGGCCACAGAAGTGGTCCCCCAGAGCCTCAGAGGAACCGAATGCCGCCCCCAAGGCCCGACGTGGGCTCAAAGCCTGATAGCATTCCTCCTCCAGTACCTAGTACTCCAAGACCCATTCAATCAAGTCCGCACAACCGGGGGTCCCCACCAGTGCCCGGAGGCCCCAGGCAGCCCAGCCCCGGGCCCACTCCTCCCCCTTTCCCTGGAAACCGCGGCACTGCTTTGGGAGGAGGCTCAATACGTCAGTCCCCCTTGAGCTCCTCCTCGCCCTTCTCCAACCGGCCTCCCCTGCCGCCTACCCCCAGCAGGGCCTTGGATGACAAACCCCCTCCACCACCTCCTCCAGTGGGCAACAGGCCCTCCATCCACAGGGAAGCGGTTCCCCCTCCTCCTCCTCAGAACAACAAGCCTCCAGTGCCTTCCACTCCGCGGCCTTCGGCCTCCTCACAGGCCCCACCTCCGCCGCCACCTCCCAGCAGGCCCGGGCCGCCTCCTCTGCCTCCAAGTTCCAGCGGCAATGACGAAACCCCAAGACTCCCACAGCGGAATCTGTCCCTCAGTTCGTCCACGCCCCCGTTACCTTCGCCAGGACGTTCAGGTCCTCTTCCTCCCCCGCCCAGTGAGAGACCCCCACCTCCAGTGAGGGACCCGCCAGGCCGATCAG
Seq A exon
GTATGACAAGACGTGGAGTGAGTTGCTTCCAAAACCCAGCCTGCCCAAATGTACCAATAATCCTGTCAGTCAAGATAGTCTAACAAAAGCAGGCATAAGTAAACTCAGACTGCTTTGTGCTTTTAAGTGGCACACGACACGTGTGATCGTGACCTCGTGTAAACCCCGGGGGAAAGTGGGACCAATATTTCTGTTGGTGTTTTAGAGATGAGGACACTGAGTAGCTAATAAAGTTAAATGGTCACGAGCTAGTTAATAAAGAAGAGGCAAGAACTTTCATCTTCCATCTCTGAAGTGTACTTGCCAGTCCACTACCCTGCCTCCCTAGAGAGAATTTCGGCGGTCTTAATTGGGAAAATAAGTCCCCACCTCCCGCAGGAGGGCTCTGTTATTCCAACAAGAGGGGAAGTTCTTCAAGAGCTAATGAACTTCTCCTGTACTTCTCTCTTCATTCGCCAGGCTTTGAGGCCATTTCCCTATTCATTAAAGACTAATGTTTAAAAAGTCCATTTTGCTCTTTGTAATCTCTGGTACATAAATCCCTTGGAGAATCAAATAAAGGTATAGACTATCTTTACAAAAATACTCAGGCATAAACTCAAAATTTGCCTGCTGTCACATGGCTTGAAGAGCCTGCTGAAGCCCATCTGAGACCCTTCCAATGCCCCCATCCACAGTTGAGAAACCTTGATCTGAGGGACAAACTTTCAGAGTATGAAAGGAAATGTGAGGATTGCCTAGAGTTTGCCCTCTCCGAATTATAATAGGCATTTTTAGTAGAATATGCTCACTTGATGCGTTTTATAGTGGTTATGGATGAACTCAGTAGAACCACCCACTTTTAAAATTGAATCTCATCGTACAGACCTTATTATGTCTGGAAATGGGGCATTTTTTTCCTTTACGCAGAGATAAGAGACCTTTGACCCTGTGACCTCAGGAACCTCATAATCACCATTCTTTAAACTTGCTCACGTACTGGAATCATCTGCGGAGCTTTAAAAACCACCAATGCCTGGGTCCCTTCCCGGAGTCTCTGGCATAATTGGTCTGGGGTGCAGACTGGGAATCAGGATATTTAAAAGCTCCCTGGTGATTATAGTGTGCAGCAGAATGTGAGAACCACACCTTGAAACCATTGTGCCATGGCCCTACCAAATGGATGAGTCAGCAGATTAAATCTTCCCCAAAATATGACAGGCATTGACATATAACATTTATTATTTCTTTTGATTACGTAAGTCATACTTGTTTATTATAGAAATACTGAAAAATATAAAGAAAATTAAAATTAATCCTTCTACCACCACTATCCAGAAATAATCATTGATAACATTCTTTTAATGTGTCCTTTCAGTCTTTTTAAAATGCATGTTTTTACAAACTTGGTATCCCACTACATATATTGTTTGCTAATTTGCTTTTTATTTAACAGTATCTCATTAATGTTTGCTGATATGATTATTCTACAGCCTGACTTGTAACAGCTACCTAATATTAAATCCTACAAATGTACCTTGATTTATTTAACCAATCCCCTCACTTGGTCATATGGGCCATCTCTAGATTTTTCCTGTTGCAGATAATGCAGTGATATATTTTTGTAGCAAAATATGTGTACACATCTCTGTATTTCCTTTGGATTAATTCCTATAAGTGGAATATCTGGGTCAGTGAGTGTGCATAGTAAACTATGGATTTCAATAGGTACTGCCAAATTGCCTTCCAGGAATTTCCTACCAATTTACATTCCCACAAGGAGCGTATGAGAGTTCATCAAAGGCCCTGTGTATTCTGAGTTGTTTGGCTTCAGTGTTATGGGGAGTGGGCCTTGGAATCTAATAGATTTGGAGTCAGATCCTGGCTCCTCCACTCAGTCTTCTGATGAGCTTTTCAAGCTTCCAAAACCTCTGAGGCCTTGTCTCCTATCCCTGTACCTCTCAGAGTTGTTATAAGAATTAAATGAGACAAGCATGTATAGTGGTTATCTTATTTCCTGGCATATAGTTATATTCAATAAATGATCATTTCTGTTATTCTGCCAGTGGGAAATAGAAATCTGTTTTCTTTTCTATTGTGCCTGCCAGGATTTGGAGCAGGGTGCCACAAGGTTGGAGAGTTAGGAACATGAACATGACCATTTACTTTAAAAAGAAAATGAGATGAAGTTACGTAGTACAGGGCCCCATAATATTGGAAGTTGAGTTTGCATGTAGTGACAGTTGTGTGGTGGTATCACCAATGAAGTTAAAACCACAGCAAATGAGACACTTTTCCTCAGTAAATCAACTCTTGCTGCCTGGGACTCCAGCAATGACAAGCAGATAGGGTAATAAATAACCACTCCCAGGTGAGGCACTGAAGACTCCTTGAGAGACCAATCAGGGCTGGGCAGTGCCTCCCACCTCTGTAAAATGTTGGAGCCAAGACTTTCTGTCAGGGATATCTGCAGTGGGCAGGTTGTTCAGTTTAAGGTTCCTAATTGGATTCTGAATCTATAGCTAATAAGATATTTATTTATAGCACCTTAAGACATTGTATTCACATAAAATGTCAGCATCTTACAAGCGGAACACACTGCTGAAGAGCAGGCATAATTACTAAGGCCATTTTGATTTACATTGGAAAATGCTCAAGTTTTTGGTTTTGTTTTTTTTAATTTACTTACTACTCAAATAGCCCCTGCATTTGGAGGATAGGAAAAGCAAGATGGTTTTCTTTTGTATTATCAAAAAAATTTCCTTGAATTTTTCTTAGAAACTTAAAAACTTATGGTTATACCATACTGCTACATTTTTTTAAAAAATGGTTTCAAGTACTTACATAGTATTTTTTATTTGCATTTTCACTAGTTTTTCCTGGCAGCAGTGCTGTGAGACAGGTGACCATCTGGCACTCTTTTACAGCTAGGAAACCAAGTTCCATAGGGTACCAGCTTGCTCAGGGTCAAGATTCACATTAGCATTTATAGCCATGGATGTTGATTAGCTGTTTGTCACTCCCTGTGTTTATCTGCCTCCCCAAAGAGGAAGAACCAAGAAGAAACTCTTACTGCTCTCAGGATGACTGGTATTTGGTTTCCTGATGCCACTTCTGCCTGGAAACAGATCATATACATCACAGAAACATGCTTCTGTAATTAACAACAAAACTATGCATTTAAAGAACTTTGTTCTTCTGAAGACCTAAAATAATTTCATAACTATCTTATTCTTTTTAAAAAAATTCTTTCATCATGTCACAGTAATTAGTTCAATAGCTCTTTAAAGGATTATAAAATGTTTTTTTAAATATACGGTTGTCCGTGTAAACAGATTTTCACCTGTTTTCAATTTCACTGTGCCATCTCCAATCTGAGTGCTAATTCAAAGCCAAAACACCCATTTAGCTATCAGTATGCACTTGTTTTGCATATACATGTGTACACATGTGCAATTTTTGTGTTTCTGTGTGTTTACTCATTTCTCAGCCAAATATCCTAGAAAATCACCCTAATTAAAGGGCATGTGTCCAGCAAGTCCTCATCAGCTGTACACCAATGGTGACCACGGTAATGGAATGTGGATGTAAGGTTCTGCACTAAGTGTCTTTTTTTGCTCCAG
Seq C2 exon
GCCCCCTCCCACCACCTCCTCCAGTAAGCAGAAACGGCAGCACATCTCGGGCCCTGCCTGCTACCCCTCAGTTGCCATCCAGGAGTGGAGTAGACAGTCCCAGGAGTGGACCCAGGCCTCCCCTTCCTCCTGATAGGCCCAGTGCTGGGGCACCTCCCCCACCTCCACCATCAACATCTATTAGAAATGGCTTCCAAGACTCTCCATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935-WIPF1:NM_003387:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)