MmuINT0176096 @ mm10
Intron Retention
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73434946-73437691:-
Coord C1 exon
chr2:73436954-73437691
Coord A exon
chr2:73435159-73436953
Coord C2 exon
chr2:73434946-73435158
Length
1795 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGTCTTGTCTTTTGCTCCAGGCC
3' ss Score
10.66
Exon sequences
Seq C1 exon
ATTCTGGAGGAAGCCGACCACCGATTTTGCCACCGGGAGGAAGAGCCACATCTGCCAAGCCCTTTTCACCCCCGAGTGGCCCGGGGAGGTTTCCCGCACCCTCCCCAGGCCACAGGAGTGGGCCCCCAGAGCCACCCAGGAACAGAATGCCTCCCCCGAGGCCTGACGTGGGCTCAAAACCAGATAGCCTTCCCCCTCCGGTACCAAATACGCCAAGACCTGTTCCGTCGAGTCTGCACAACCGGGGATCCCCAGCAGGGCTGGGAGCCCCCAGGCCCCCCTTTCCCGGGAACCGAGGTGCTGCTTTTGGAGCAGGCTCTGCGCGCCAGAACCCCTCCGGCTCCTCCTCTCCGTTTCCTAGGCCCCCTTTGCCCCCCACCCCAAGCCGAGCCTTGGATGACAAGCCCCCTCCACCACCTCCTCCCGTGGGCAACAGGCCCTCCATGCACAGAGAAGCGGTGCCCCCTCCCCCCTCACAGACCAGCAAACCTCCAGTGCCTTCCACCCCGCGGCCTGGGTTGGGTTCGCAGGCACCACCTCCTCCTCCACCGCCCAGCCGGCCAGGGCCCCCTCCTCTGCCTCCAGCTTCCAACGACGAGATCCCCAGGCTGCCACAGCGGAACCTGTCCCTCACGTCCTCTGCACCTCCATTGCCTTCACCTGGACGCTCAGGGCCTCTCCCTCCCCCACCCAGCGAGAGGCCCCCTCCTCCTGTAAGGGATCCACCAGGCAGATCAG
Seq A exon
GTATGGCAACGCGGGGATGTCACCTCTCTAAAACCCTGCTCTTGCTCTCCCAAATGTCTCAAACAAAACTGAGTAAAGCCATGTATGCTGCCCCATACCGATGGTCTAATGTCATGGTGGAGCCGTGACCTCTCAAGAAAGGGGCCAGATAGTTTGTGTCTAAGAGGCAAGCAGACTTTCATCTTCCACCGGGCCCTGCTCCCTAATGGGAAGCTGGGTTGTCTTGGTTGGAAGTAAGTCCCCATGAGAGTGCCCATAATGCCAAAGACAAAGCAGTTACATCACAACCGGAATGAACTCTTTCCCTCTCCCTAGGCCAGGCTGAGTCTACATCTCTGCCCACAGTGCAGGCGAGCTGGAGAGGTGGCATGTTCAGAGGTCAGGAGCACTTCTAGCAGTGGAAACAAATACCTGGACAAAAGCCTGTAGCTCGGCTCAGAGAGCTGCGGGAGCCCCAGGCTCAGGAGGAAACGTACATCTTATTTAGAAAGTGGTTTCAAATGTGTTGGTAATACACACACACACACACATACATATATATATATGTATATGTATATGTATACACACACACACACACACACACACACACACACACACATATATCTTTATTTTATATCTAAGTATTTTTGAGACAGGCCCTCACATGTAACCCTGGTTAGCCTGGAACTCAATTTGTAGACCAGGCTAGCCTTAAACTCATAGAGATCCACCTCTCTCTGCCTCTGGAGTGCTGGATTGTATGTAATACTTTTAGTTTGCCTTTTCAGTTATTGCTCCTGGCACTGTTGTGACCAAGGTGACAACTACCTTATTCTTGGTAGACAGGGACCCACGCTCCACTGCCAAGAGCATACCCAGGAGCCGGACCCACCACCTACTGTCTGTAATGGGAGAGTAAGATCAGTGGTTTCTCATTTCCTGTGCCTCTCTACCCACCCACCCACACACATACTACACACACACCACACACACATAAACACAACCAACACTCACACATACATACAACCACACACACACACAGAGGAAAATACTGTACATGTAAAAACTTAGTACTGGAGCCAGCAAGGCAATGGGCTCAGCCAGTAAGGATATTTGTGGCCCATGCCTGACGACCTGAGTTTGACCCCTGGAATCCAGGTGAAGATGTAAGGCAAAAGTAAACTTTCTAAAGCTGCTCTCTGAACTCCATATGTGTGACATAGTGTGTGCACACATATACGCACAAATAATTTACATTTTTATTTTATTATATATGTGTGTGTATTGGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCTGTAGACCAGGCTGGCCTCAGAAATCTGCCTTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCACGCACCACCACTGCCTGGTTTTAAATTTTTTAAAATCTAGAAATCTTAATTTTTCTAAAGGCCTAAACTAACTTTATAAGTATCTCACTCCTTTTAAACAATTCTTTTGTGGTATCGCAATAATTAGTTCAGTAAGTCCTTAACAGGGTAAAATGCTTTTTCAATGACATGGTTCTCAATATAAATAGTTATCTGTTTCTAATTTCACTGTTTAGTCCCCAGCCTCAGTGGTTACTTGAAGCCAGACAGCCCGTTAGCTGCTATTACATGCACTGACTTTACACATCCCCTTCATGTTTCTATCCGTGTCCACCTTTTCTCCTTTTCCCTAGCCCAAGGGCGTGTAGTCAGCAGGAACTCCACCTTGCACAGTGATGATGACCAATGCTTCACCAGATGTCTTGTCTTTTGCTCCAG
Seq C2 exon
GCCCCCTCCCACCACCACCTCCAATAAACAGAAATGGAAGCACAGCTCGGGCCCTGCCTGCCACCCCTCAGTTGCCATCCAGGAGTGGAATGGACAGTCCCAGAAGTGGGCCTAGGCCTCCTCTTCCTCCTGACAGGCCTGGTGCTGGGGCGCCGCCCCCACCCCCACCCTCCACATCAGTTCGAAATGGCTTCCAAGACTCATCGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284:ENSMUST00000094681:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGACCAGCAAACCTCC
R:
CACTCCTGGATGGCAACTGAG
Band lengths:
353-2148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types