GgaINT0047294 @ galGal3
Intron Retention
Gene
ENSGALG00000009321 | Q5F3Q7_CHICK
Description
NA
Coordinates
chr7:18041036-18043602:+
Coord C1 exon
chr7:18041036-18041803
Coord A exon
chr7:18041804-18043389
Coord C2 exon
chr7:18043390-18043602
Length
1586 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGCCTCTATTCTCTTTCCAGGCC
3' ss Score
11.14
Exon sequences
Seq C1 exon
ATACTGGGGCAGCCCGCCCACCCGCACTGCCGCCTGGAGCCCGCTCTGCTGCTGCCAAGCCATTTTCAGCACCAAGTGGCCCACCTCGCTTCCCAGGGCCGCCACTGGGGCAGCGGAGCCCAGCTGCTGACCCTCAGAGGAGCCGCCTGCCACCACCCAGGCCCGATGTGGGTTCTAAGCCTGAGGCCACACCGCCACCGGTGCCTAGCACACCCCGGCCCATCGCCTCCAGTCTGCACGGCCGGGGTTCAGCACCAGCGCCAGTCCTCAACCGCCAGCCCAGCCTGGGGCCGACGCCACCGCCATTCCCAGGCAGCCGGGCCGCAGGGTCAGCTGGGTCCCTGCGGCAGCCTGGCCCGGGCCCAGCAACCCCATACTCGGGCAGACCACCGCTGCCACCCACACCCGGCCGCTCACCAGTGGATGAGAAACCACCGCCGCCACCACCTCCCTCTGGGCACCGGCCAACTGCCAGCCGGGACATGGCCCTGCCGCCGCCACCACCACAGAACAGCAAACCACCTGTGCCTGCTTCACCGCGGCCACCCCTCGGTGTCCCTGCACCCCCACCACCCCCCAGCAGGCCAGGGCCACCCCCTGTGCCCCCCGGTCCCGCCAGCAGTGACGAAATGCCACGACTGCCCCAGAGGAACCTGTCCTTGGTGCCCCCTGCTGCGCCTAGCTCTGGGAGTGGCCGCTCCGGCCCCCTGCCACCACCACCCAGTGAGAGGCCCCCGCCACCCATCAGGGATCCCCCCAGCCGAGCAG
Seq A exon
GTAGGGGCTGGGGCATGGGGCTGTTGGGCACAAGGGATCCTGCAGTTGAAAAATGAAGGCTTGTGGGCACTGCTGTAGCTCAAGGAACATTACTGTGCATTCCCAACTAACTCACAGATCTGGGCAGGTTTTGTGTAGTTGTTGTAACAAGAATGGGGCTGCCCACCAGGTTCTGTACCAACAGGGACCTGTTTTACCCAGCTCCCGTGAGGTGACAACATTCACCTTCTTGAGTCAGCCAGTGTGAGTTAATGGCAGTGTTGTCATGAGTGGAAAGCCTGGCCTTCTACGTGTTGGGAGGCACAAACACAGCAAAATACTAATTACTTTAATAGAAGGCTGATCTGACAGTTGTCAAACAGGAGGCAGTTGCTGCAGCGTGACTAACAGTCATTACCTGCTAGACACAGATTCCAAATGAGACTGAAAATAGCGTTGTCTCCATCAGGTTATTTCATCACATGTTTTGTCCTCTGACAATCACTGTAACTTTTAAGAGTTGGGCCTCATGACTCTCAGTGCCTGATGGCTTTCCTTGTGGAGCTGGAGGAGCTGGGGCACAAATCGGCCCCATAACACAAGGAATCTGCACCTCAATGCACTCACAGAGGCTGGCACATGGCTGCCTGGCTGCAGGAATTGTCTCACGTTTGTTGGGGAGCACAGAGCAGTGCTGCAGAGTACAGCTGTGACTGTTTGGACACTGCAGGAGCTTCTCCTGTGACAATCTCTGCTTTCACAGGAGGTTCCTGGCCAGCTCTTTTCTGATGCAGATTTTAGTAAATGTATACTACCTTTCTGCTGACTCAATGAGCAGAAGGAAGCTAGAGATATAAATTATAAATGCAAATGCTGTTCTGGAATGGTTTGAGGTAGATGATGGGTTTTAGTAAGGTTTAGGGAGAGAAACCATTCTGGAAGCTTTCCAGTATGTGTCTGTAACAAGATTTCATCAGAACAAGGAAGCATTTAAGAAAATGAACATAATTGTCAGTTGCCCAACTGTGCTGAGCAGAGGTGCTGAGACCTTTGGCCATGTGCAGCCCTCCACACCCTCCTGTGTGTGGCCTCCTCCTGTCCAAGCCATGGATTCCTCTCCTGTCCCAGTTTACTACTGCTCAGAGAGCATCACTTTCCCAGCCTGTGTGGGCTGTGCCTTCACGTTGCCATGCAGAGCTTTTCTGCTTCACTGTGAAGATGCATGGGGAGTTTGATGGGGTATGGCCTGGATCCCCAGACCACAAAGTTCCTGCTGTAACTATCCATTGAGGCCATTGTGGTTTAGTGGTTTGAAATCAACTTCAAGGGCCAACACCTCTACAGAGTTACTGCAGCTGAGGGAGGCAGGAATATGGGTGCTGAGAAGTGTTTGTGTTTGGATATACCTGCTCCTCTGGGCTCTGCAGGTTGTGGGCTCACCATCAAGCCCTGGGAGCAGGGAGGTGGGTCTGGAGTCTGCTCTTCCCAGGGCCCAAACTGGCCTGCGCTCTGTTAGTGGGAGACCGTGGGACACGGGCAGCAGTGTGCCACCACAGAACAGTTTGGGGCAAACAGCGTTTTTGTGCTTGCCTCTATTCTCTTTCCAG
Seq C2 exon
GCCCCCTGCCACCACCACCTCCCATCAGCAGGAACGGTAGCACCTCGAGGGCTTTACCTGCCGCTCCCCAGCTGCCTTCCCGGGCTGGGCTGGAGAACCAGAGGGGTGGGCCCCGGCCACCACTTCCCCCAGACCGGCCGGGAACGGGTGCACCACCACCACCACCACCACCTTCAGCAGCGCTCCGGAACGGCTTCCAGGAGTCGGGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321:ENSGALT00000038663:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACGAAATGCCACGACTG
R:
CGACTCCTGGAAGCCGTTC
Band lengths:
354-1940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]