HsaEX7001570 @ hg38
Exon Skipping
Gene
ENSG00000236449 | AC018890.6
Description
NA
Coordinates
chr2:174547369-174774827:+
Coord C1 exon
chr2:174547369-174547477
Coord A exon
chr2:174729721-174729824
Coord C2 exon
chr2:174772749-174774827
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTATGTACTTGTGTTGCAGGTG
3' ss Score
9.48
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCTGGAACAAATCATGGTAGTAAAATGGCGGCAGAGAGCTAGTAATGTGTCTGCAATTGGTGGGTTCTTGGTCGCACTGACTTCAAGAATGAAGCCGCGGACCCTCACG
Seq A exon
GTGGTGTCTTTGGTGGCTGTTCACCCTTCCACAGTAAACATGCTTGGGAAGCAACTTTGCCAAAAGCCTTCGGACAGTCCAGCGTCAACACCGCAAGCCAAGTG
Seq C2 exon
GAGGAGAAAAATCTGCGCCTCTTTCTCTCAAGGGATACTTTGTCTCTGGGGTACTTTCTGACCCAGTGGACCCCTGGCAGAAGTAAGCGTGGACTGTGGCTGCAGGACCACGCAGAGTCAACACGAACCGAAGCCAGGCCTTGGCCACGGCAGCTCTGGGGTCCAACCACTTGATCAATGCAGGAAATGCTTTGATGGCAGAATTCTTCCATGGCCAGCTTCTCATATTCTCTGGGACAGACACAAACCAAGAAAAATGAGTGTGGCGCAGAATCTGATGTGTCCTTCCTTACCCCGTGCTGGTAGCAAAAAGTATGTCTTGAACTTTTCTTTGTTACACACAGTCTGGGTAATAACAGACTGAAGGAAAACTAAAGAAGCTTGGGAGGCTAAGTTCAATGACAAATGAAGAACTAAGGCAGAGAAAAAAGAGAATTGAGAAAGTGTCTGGGTGTCTGGAGAGGTTGGGGGAATAGAGAGGGAGGAGATATAATTGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236449-'1-20,'1-17,12-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGCAGAGAGCTAGTAATG
R:
ATCAAGTGGTTGGACCCCAGA
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains