GgaEX0024915 @ galGal3
Exon Skipping
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141546936-141564538:-
Coord C1 exon
chr1:141564472-141564538
Coord A exon
chr1:141551444-141551550
Coord C2 exon
chr1:141546936-141547057
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTACTTCTATTTGTTTTTAGGAG
3' ss Score
9.69
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCTGGACTAATTGAAGCCAATGGAGAGCTTAAGGTGTTTATAGACCAAAACCTAAGTCCTGGAAAAG
Seq A exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
Seq C2 exon
GTTATCGGTACACCTCAGAGACCTTCAGTGCCAAATACTATCCTGGTAGGAAGTCCACATACACCTAACACACATTTTGTATCACAAAACCAGACTGCAGATTCTTCGCCGTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'2-6,'2-3,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.139 C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTAATTGAAGCCAATGG
R:
GCAGACCACGGCGAAGAATC
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]