BtaEX0036250 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90745620-90748933:+
Coord C1 exon
chr12:90745620-90745686
Coord A exon
chr12:90746485-90746591
Coord C2 exon
chr12:90748812-90748933
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCGTCGCCTCTTGGTTGCAGGCG
3' ss Score
6.58
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCCGGTCTAATTGAAGCCAACGGGGAACTCAAGGTCTTCATAGACCAGAACCTCAGTCCTGGGAAAG
Seq A exon
GCGTGGTGTCCCTGGTTGCCGTCCACCCCTCCACAGTGAACTCTCTCGGGAAGCAGCTCCTGCCAAAGACCTTTGGACAGTCCAACGTCAACATCACTCAGCAAGTG
Seq C2 exon
GTAATTGGTACGCCTCAGAGACCTGCAGCGCCAAACACTATCGTGGTGGGAAGCCCACACACCCCTAACACTCACTTTGTCTCCCAGAACCAGCCTTCAGACCCCTCACCTTGGTCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645-'6-6,'6-3,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTCTAATTGAAGCCAAC
R:
GCAGACCAAGGTGAGGGGT
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development