GgaEX0024915 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136656142-136673744:-
Coord C1 exon
chr1:136673678-136673744
Coord A exon
chr1:136660650-136660756
Coord C2 exon
chr1:136656142-136656263
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTACTTCTATTTGTTTTTAGGAG
3' ss Score
9.69
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCTGGACTAATTGAAGCCAATGGAGAGCTTAAGGTGTTTATAGACCAAAACCTAAGTCCTGGAAAAG
Seq A exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
Seq C2 exon
GTTATCGGTACACCTCAGAGACCTTCAGTGCCAAATACTATCCTGGTAGGAAGTCCACATACACCTAACACACATTTTGTATCACAAAACCAGACTGCAGATTCTTCGCCGTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823_MULTIEX1-3/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.890
Domain overlap (PFAM):
C1:
PF059717=Methyltransf_10=FE(29.3=100)
A:
PF059717=Methyltransf_10=FE(46.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTAATTGAAGCCAATGG
R:
GCAGACCACGGCGAAGAATC
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]