DreEX6037340 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35145958-35150386:+
Coord C1 exon
chr9:35145958-35146024
Coord A exon
chr9:35146154-35146257
Coord C2 exon
chr9:35150265-35150386
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTATTCTTCTACCCCTGCAGGTG
3' ss Score
11.48
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAG
Seq A exon
GTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATG
Seq C2 exon
GTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.371 C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATTGAGGCCAATGGGG
R:
CCTGAAGACCAAGGAGAGGCT
Band lengths:
185-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]