RnoEX0090066 @ rn6
Exon Skipping
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81105465-81119003:+
Coord C1 exon
chr16:81105465-81105531
Coord A exon
chr16:81113894-81114000
Coord C2 exon
chr16:81118882-81119003
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTCGTGTTGTTGTGTTCTAGGTG
3' ss Score
11.53
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GCCAGTCTAATTGAAGCCAACGGAGAACTAAAGGTCTTTATAGACCAGAATCTTAGTCCTGGGAAAG
Seq A exon
GTGTGGTGTCTCTTGTGGCTGTGCACCCATCCACAGTGAACACACTGGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
Seq C2 exon
GTGATTGGCACGCCTCAGAGACCTGCAGCAGCCAACACTATTGTGGTAGGAAGCCCACACACTCCCAACACTCACTTTGTGTCCCAGAACCAGACGTCTGACTCCTCACCTTGGTCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222-'4-10,'4-8,8-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCTAATTGAAGCCAACG
R:
AGCAGACCAAGGTGAGGAGTC
Band lengths:
187-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]