HsaEX1044033 @ hg38
Exon Skipping
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:174585523-174623508:-
Coord C1 exon
chr2:174623399-174623508
Coord A exon
chr2:174616363-174616530
Coord C2 exon
chr2:174585523-174585611
Length
168 bp
Sequences
Splice sites
3' ss Seq
GTATCCTCTTCCCTCCTTAGCTC
3' ss Score
9.11
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GGAAGCCAGCTACCGTGTTAAGAGCTGCCTTATAGAGAGATGCATGTGCAGAGAACTGAGGGAGACCTGTAACCAACAGCCAGTCAGGAAATGAATCCTGCCAACAACAT
Seq A exon
CTCCTTAAGGACCACACTGTGGAAGGAAGACTGGAAAGGCCTCAGCAGGGGAGAAACCATGTGATGGAGGCTCAGAGTGGACTTCTGATCTAGTAGTGGCTTCAGGAAGGGACGCCAGACTTGCCATTCCAGCAGGGGTCGAGGCCTCCCTGTCTCGTGAAGAGGAAG
Seq C2 exon
ATTTATCAGCAAGACTGTTGAACGCATAACTGCCCAAGATGCCTGTCCCTCCCCCTCCAGCACCCCCGCCGCCCCCGACGTTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935_MULTIEX1-6/9=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.1=94.1),PF062736=eIF-4B=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTACCGTGTTAAGAGC
R:
CAGTGCAAACGTCGGGGG
Band lengths:
195-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains