HsaALTD1016193-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119803206-119804478:-
Coord C1 exon
chr12:119804163-119804478
Coord A exon
chr12:119804097-119804162
Coord C2 exon
chr12:119803206-119803389
Length
66 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
3' ss Seq
TCTTGTTTTTCTTTAACCAGCTC
3' ss Score
7.57
Exon sequences
Seq C1 exon
CTGGCCCCTGGCAGGCAGGCGGCAGCCAGGTGGGGTTCCAGCCAGAGCACGCACGCACGGAGCCGGGAGCATGCAGCCTGCACTGCGGGGGATGTGATGCTCGGCTCTAACTCGCCTGGCTGGCCCGCCACGGACGCCTCAGCTTGCAACCATGGTAACGTTTCTGGCGGGGGACACCCCCGGGAGCCCACCGCGATGGGCAGCCTCCTGGTGACTGATGGACGAGTGTCCACCTCCCAGACCGAGAGCGCTTAGTAGGTCGGAGGAAGTGGAGAGGATGTAACACGCCCCCAGCCGGGAGTGAAGCCCTGAGGAG
Seq A exon
GTAGGAGCCGCATATGTCCATCCGTGCATTCCCACCGTCAGCGCGCAGGGGTGCTGTAGATCACCG
Seq C2 exon
CTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAGCCCCTCAGGCTTCTCGGGTGAAGAACTGCCGTTTGTGGGGTTTTCGTACAGCAAGGCACTGGGGATTCTTGGTAGATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-19-21,20-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.293
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=75.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGCTTAGTAGGTCGGA
R:
CTGGCACGGAGAGGATGAAAC
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains