HsaALTD1016193-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119803206-119804478:-
Coord C1 exon
chr12:119804163-119804478
Coord A exon
NA
Coord C2 exon
chr12:119803206-119803389
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCTTGTTTTTCTTTAACCAGCTC
3' ss Score
7.57
Exon sequences
Seq C1 exon
CTGGCCCCTGGCAGGCAGGCGGCAGCCAGGTGGGGTTCCAGCCAGAGCACGCACGCACGGAGCCGGGAGCATGCAGCCTGCACTGCGGGGGATGTGATGCTCGGCTCTAACTCGCCTGGCTGGCCCGCCACGGACGCCTCAGCTTGCAACCATGGTAACGTTTCTGGCGGGGGACACCCCCGGGAGCCCACCGCGATGGGCAGCCTCCTGGTGACTGATGGACGAGTGTCCACCTCCCAGACCGAGAGCGCTTAGTAGGTCGGAGGAAGTGGAGAGGATGTAACACGCCCCCAGCCGGGAGTGAAGCCCTGAGGAG
Seq A exon
NA
Seq C2 exon
CTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAGCCCCTCAGGCTTCTCGGGTGAAGAACTGCCGTTTGTGGGGTTTTCGTACAGCAAGGCACTGGGGATTCTTGGTAGATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-19-21,20-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.293
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=75.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGCTTAGTAGGTCGGA
R:
CTGGCACGGAGAGGATGAAAC
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains