MmuALTD1016636-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115907470-115908821:+
Coord C1 exon
chr5:115907470-115907834
Coord A exon
NA
Coord C2 exon
chr5:115908638-115908821
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTTGTTTTTCTTTTAACCAGCTC
3' ss Score
7.61
Exon sequences
Seq C1 exon
AGTGACTCATGCGGCTCCGTCACTCAGATCGGCATTGGCCCCTGCCACGCAGGGTGGCCAGGTGGGGTTACCGCCAGAGCACGCACTAAGGAGTGGGGAGGTGGTAGCATGCAGCCTGCACTGCGGGGGATGTGATGCCGGCTTGCCAACTTCCCCCTGCCTGGTCCACTGCGGACGTCCCAGCCTGCAACCATGGTAACACTTCTGACTGGAAATGCCCCTGGGAGCCCCCCACGATGGGCAGCCTCCTGGTGACTGATGGACAGCCGCTCACGCGTCTGAGTGAGAGAGCCTAGTAGGTCTGCAGGCGGCAGAGACGATGTGATTCCACCCCCCCTCCCCAGCTGGGAGTCATGCCATAAGAG
Seq A exon
NA
Seq C2 exon
CTCCTCCCCCCTTCGTCCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTGTGTGCCAGCTGAGCCCCTCGGGCTTCTCAGGCGAAGAGCTGCCGTTTGTGGGATTTTCGTACAGCAAGGCACTGGGGTATCTTGGTAGATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-25-28,26-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.242
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=75.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTGAGTGAGAGAGCCTA
R:
CCAGTGCCTTGCTGTACGAAA
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types