HsaALTD1018857-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000130779 | CLIP1
Description
CAP-Gly domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr12:122355115-122361098:-
Coord C1 exon
chr12:122361074-122361098
Coord A exon
chr12:122360959-122361073
Coord C2 exon
chr12:122355115-122355312
Length
115 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGG
5' ss Score
5.17
3' ss Seq
TCTCTAACTTTCCTTTACAGTTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
CCAAAGCCAAGGCCAACGCAGTGAG
Seq A exon
GCGAGTGATGGCGACCACGTCCGCCAGCCTGAAGCGCAGCCCTTCTGCCTCTTCCCTCAGCTCCATGAGCTCAGTGGCCTCCTCTGTGAGCAGCAGGCCCAGTCGGACAGGACTA
Seq C2 exon
TTGACTGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGTACCACTGCCCTCCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCGGAACGGGATCTGGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTAGCTCTGGCCCGGGACGGACATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-37-37,38-37,39-37,40-37-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.590
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PD(27.3=24.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAAGGCCAACGCAG
R:
CTGGTCATGTCCGTCCCG
Band lengths:
221-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains