HsaALTD1025226-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175993182-175994280:-
Coord C1 exon
chr2:175994231-175994280
Coord A exon
chr2:175994145-175994230
Coord C2 exon
chr2:175993182-175993223
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
TGTTTCTGTTTGTATAACAGACA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTTGAACCATATGAAATTGCCAGTATTCAACTGCTTGGACTTAGCAAAAT
Seq A exon
GTCAGTTTCATATGGTTAACCCTAATGTTAACAACTCTTATGGAAACTACAATGAACTGATATTCATTACCCTCTTGGATTGTTGA
Seq C2 exon
ACAAAACCTTCAACTGTAGAAGTTCTAGAAAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-10-7,11-7,12-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF083957=7tm_7=FE(9.4=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAACCATATGAAATTGCCAGT
R:
TCTAGAACTTCTACAGTTGAAGGTT
Band lengths:
79-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains