HsaEX0034248 @ hg38
Exon Skipping
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175979810-175995646:-
Coord C1 exon
chr2:175995558-175995646
Coord A exon
chr2:175993182-175993223
Coord C2 exon
chr2:175979810-175979868
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTTTGTATAACAGACA
3' ss Score
8.4
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
ACAAAACCTTCAACTGTAGAAGTTCTAGAAAGTATAGATAAG
Seq C2 exon
CATCTGGAGCATAAGAACAGTAATTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320_MULTIEX1-3/12=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PU(5.0=77.8)
A:
PF083957=7tm_7=FE(9.4=100)
C2:
PF083957=7tm_7=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAATTCCTTTGGACAATTGA
R:
TCTGTTCTCTTGGAAAAGAAGAAAA
Band lengths:
140-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development