MmuEX6102216 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74568941-74573626:-
Coord C1 exon
chr2:74573538-74573626
Coord A exon
chr2:74570935-74570976
Coord C2 exon
chr2:74568941-74569128
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTCTCTAAAACAGGCA
3' ss Score
8.07
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTGCAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
Seq C2 exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTACCTGTTTACCTGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAGTTTACAGCAAGACTTGTCATGACACTCCCATTTTTTGCTTTTCCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'10-13,'10-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF136871=DUF4153=PU(8.7=64.3)
C2:
PF136871=DUF4153=FE(60.2=100)
Main Skipping Isoform:
ENSMUST00000102676fB12243
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATTATTTTCTCGATGGAGG
R:
ACCACAAGTACACAATTAAACAGGT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types