GgaEX1031921 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17484212-17486825:+
Coord C1 exon
chr7:17484212-17484284
Coord A exon
chr7:17485427-17485468
Coord C2 exon
chr7:17486638-17486825
Length
42 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTCCCTTGTAAGCAGGCA
3' ss Score
5.27
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq A exon
GCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
Seq C2 exon
GAAATACAGACCTTAGAAGAATTTAGAGAAAAAAATCAGAGACTTCAGAAACTATGGGTTGGAAGGCTACTCTTCTACTCTTCACTTCTTTATCTTGCCACCTGCTTAATTGTATATTTGTGGTGTCTTCCTGATGAATGGACAGCAAGGTTTTTTATGACACTTCCATTTTTTGCATTTCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGTAGAAGATGGGTGGA
R:
GCAGGTGGCAAGATAAAGAAGTG
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]