DreEX6020734 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10623517-10627099:-
Coord C1 exon
chr6:10627051-10627099
Coord A exon
chr6:10626911-10626952
Coord C2 exon
chr6:10623517-10623704
Length
42 bp
Sequences
Splice sites
3' ss Seq
GTAATATGCTGTTTCAACAGACC
3' ss Score
7.3
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGTGGATTTGCAGTACTGACAATGGGAGCCATCATTTCCAGGTGGAAG
Seq A exon
ACCAAACCTTCCACTGTGGAACTGCTAGAGTCACTGGATAAG
Seq C2 exon
GACATAAAGGATCTGGAGGAGTTTCGTGCAAAGAACCAGCGTTTGCTGAAGTTATGGGTCGGCCGGCTTCTCTTCTACTCATCTGCTCTGTACCTGCTGACATGTCTGTGTGTTTATTACCTGTACTTCCCCCAGCAGTGGGGCGCTCGGCTCATCACTGCCCTGCCTCTGCTGGCCTTTCCTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PU(5.7=88.9),PF110263=DUF2721=PU(5.6=77.8)
A:
PF083957=7tm_7=FE(9.3=100),PF110263=DUF2721=FE(10.5=100),PF060117=TRP=PU(9.2=71.4)
C2:
PF083957=7tm_7=FE(44.3=100),PF110263=DUF2721=FE(50.0=100),PF060117=TRP=FE(56.9=100),PF074317=DUF1512=PU(20.0=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACTGACAATGGGAGCC
R:
TGTCAGCAGGTACAGAGCAGA
Band lengths:
141-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]