GgaEX1031921 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15872556-15878092:+
Coord C1 exon
chr7:15872556-15872637
Coord A exon
chr7:15873777-15873821
Coord C2 exon
chr7:15878034-15878092
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTTTCCCTTGTAAGCAG
3' ss Score
4.2
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTGAATTCTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq A exon
CAGGCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
Seq C2 exon
AATCTGGTTTATAAGAACACTGCTCATTTTTTTCTTTTCCAAGAGGACAGAAAGGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283_MULTIEX1-2/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTACCTACATTTGTCCACTG
R:
TATTCCTTTCTGTCCTCTTGGAAA
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]