RnoEX0050297 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61484419-61488758:-
Coord C1 exon
chr3:61488670-61488758
Coord A exon
chr3:61486113-61486154
Coord C2 exon
chr3:61484419-61484606
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTTTCTAAAACAGGCA
3' ss Score
8.3
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTACAGATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
Seq C2 exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTATCTGTTTACATGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAATTTATAGCAAGACTTGTCATGACACTCCCATTCTTTGCTTTTCCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'7-5,'7-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF136871=DUF4153=PU(8.9=64.3)
C2:
PF136871=DUF4153=FE(61.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTTCTTTTGGACAACTCA
R:
ACCCATAATTTTTGCAATCTCTGA
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]