DreEX0043333 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2025334-2029842:+
Coord C1 exon
chr9:2025334-2025432
Coord A exon
chr9:2026438-2026479
Coord C2 exon
chr9:2029655-2029842
Length
42 bp
Sequences
Splice sites
3' ss Seq
ACTTGTGTGTCCATTTCCAGGCT
3' ss Score
9.69
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGTGTGGCTTTGGCCTGGAGTAATAAGTGTAACAGAAGCCAGGCTCTGAGAGGAAGGACTGCCCTCACAGGATGGGGGCTGTGGTGTCTCGGTGGAGG
Seq A exon
GCTAAACCATCCACTGTAGAGGTCTTGGAGGGTCTTGATAAG
Seq C2 exon
GATATCCAGGTCCTTGAGGAATACAGAGAGAAGAACCATAAGCAGCTGAAGCTATGGGTTTACAGACTGCTGTTGTACTCCGCTCTGCTGTACCTGATGGCCTGTGCAGTCGTATACGCGTGGTACATCCCGGAGCGGATGATAGGAAAATTAATAGTGGCATCACCCTTCTTACTGTTCCCTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PU(5.7=88.9)
A:
PF083957=7tm_7=FE(9.3=100)
C2:
PF083957=7tm_7=FE(44.3=100),PF074317=DUF1512=PU(20.0=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCTGAGAGGAAGGACTG
R:
CAGAGCGGAGTACAACAGCAG
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]