BtaEX6008937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20946893-20949506:+
Coord C1 exon
chr2:20946893-20946981
Coord A exon
chr2:20948573-20948614
Coord C2 exon
chr2:20949319-20949506
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTTTATATAACAGACG
3' ss Score
6.34
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGTGAATTCCTTTGGACAACTGATGATATTTATTATTGTGCCCAGTTTTTACAAATGAAAAATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
ACGAAACCTTCAACTGTAGAGGTTCTGGAAAATATAGATAAG
Seq C2 exon
GAAATTCAAGCATTGGAAGAATTTAGGGAAAAAAATCAGAGATTACAAAAATTATGGGTTGGAAGATTAATTCTGTACTCTTCAGTCCTCTATCTATTTACATGTTTAATTGTATACTTATGGTATCTTCCGGATGAACTTACAGCAAGACTTGCCATGACACTCCCATTTTTTGCTTTCCCGTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCCAGTTTTTACAAATGAA
R:
AGATAGAGGACTGAAGAGTACAGA
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]