HsaEX0034247 @ hg38
Exon Skipping
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175993182-175995646:-
Coord C1 exon
chr2:175995558-175995646
Coord A exon
chr2:175994134-175994280
Coord C2 exon
chr2:175993182-175993223
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTCTTTCATAATAGGTT
3' ss Score
10.09
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GTTGAACCATATGAAATTGCCAGTATTCAACTGCTTGGACTTAGCAAAATGTCAGTTTCATATGGTTAACCCTAATGTTAACAACTCTTATGGAAACTACAATGAACTGATATTCATTACCCTCTTGGATTGTTGAGTATGTAATTG
Seq C2 exon
ACAAAACCTTCAACTGTAGAAGTTCTAGAAAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320_MULTIEX1-2/12=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PU(5.0=77.8)
A:
NA
C2:
PF083957=7tm_7=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAATTCCTTTGGACAATTGA
R:
AGAACTTCTACAGTTGAAGGTTTTGT
Band lengths:
115-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development