HsaALTD1025368-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:28835976-28836487:+
Coord C1 exon
chr3:28835976-28836020
Coord A exon
NA
Coord C2 exon
chr3:28836364-28836487
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
CCTGAGTGATGCTCTTCCAGTTT
3' ss Score
3.93
Exon sequences
Seq C1 exon
GAGCTCCATGGGAAGAGGCCCGAGGAATGAGCACAGTCTTGACAG
Seq A exon
NA
Seq C2 exon
TTTCAGTGTGGGCTGACTGTGTCCTGAAGAATGGGCTGGGAAGCAGCTTTACATTCAGCCCCTCGAGGAAGGTGACTCATCTGGGTTTGTTGCCCTGTCTGATGCTCCCCTACTTGGGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-14-10,15-10,16-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGAATGAGCACAGTCT
R:
GAGCATCAGACAGGGCAACAA
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains