HsaALTD1025368-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:28835976-28836487:+
Coord C1 exon
chr3:28835976-28836020
Coord A exon
chr3:28836021-28836280
Coord C2 exon
chr3:28836364-28836487
Length
260 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGT
5' ss Score
7.48
3' ss Seq
CCTGAGTGATGCTCTTCCAGTTT
3' ss Score
3.93
Exon sequences
Seq C1 exon
GAGCTCCATGGGAAGAGGCCCGAGGAATGAGCACAGTCTTGACAG
Seq A exon
GTGAACCAAAGACGCTTTTGTTTTCCAGGCTGGGGCTGGCTGCCAGGTTGTGGATTTCTGTCAGTCAGCTGGCTGCCACACTTCTTTGCTTCTCTATTTTCCCAAGGAAAAAGAAACCATTAGTGATTTGCAAAGCTGCTCCAGAGGATGTAGGGTTTCAGTGTGAGACCGAGATGGGGTTAGAATGGGGAAGCCATCTCTCTACTTTGGCCAGAAGCCTCTGACAGGAGTGGGGCTTATTAATAATTGCAGCCAAGGGG
Seq C2 exon
TTTCAGTGTGGGCTGACTGTGTCCTGAAGAATGGGCTGGGAAGCAGCTTTACATTCAGCCCCTCGAGGAAGGTGACTCATCTGGGTTTGTTGCCCTGTCTGATGCTCCCCTACTTGGGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-14-10,15-10,16-10-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCATGGGAAGAGGCC
R:
AGTAGGGGAGCATCAGACAGG
Band lengths:
159-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains