HsaEX1030896 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:28576273-28865292:+
Coord C1 exon
chr3:28576273-28576496
Coord A exon
chr3:28836364-28836487
Coord C2 exon
chr3:28865224-28865292
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCTGAGTGATGCTCTTCCAGTTT
3' ss Score
3.93
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCAGCCGCCGCCTCAGCAGCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG
Seq A exon
TTTCAGTGTGGGCTGACTGTGTCCTGAAGAATGGGCTGGGAAGCAGCTTTACATTCAGCCCCTCGAGGAAGGTGACTCATCTGGGTTTGTTGCCCTGTCTGATGCTCCCCTACTTGGGACACTG
Seq C2 exon
AGAACTTCAGCCAACAAGTCTTCAGGTGCTCCTTCCTATAGCAGATGGTCCAGTTCACAGCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX2-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGGATGTTGAGGGAGT
R:
AGCACCTGAAGACTTGTTGGC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains