HsaEX0001565 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:28576273-28756968:+
Coord C1 exon
chr3:28576273-28576496
Coord A exon
chr3:28736009-28736163
Coord C2 exon
chr3:28756758-28756968
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTCTTTTAACAGTCA
3' ss Score
8.82
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCAGCCGCCGCCTCAGCAGCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG
Seq A exon
TCAGGCCACTCTTCCATAGGGCTGCTGCAGTTTGCTGGGGGTCTGCTTCAGACCCTAGTTGCCTCCATTTTTCCCATGCCTGGAGGTATCACCAGTGAAGCCTGCAAAACAGCAAAGATGGCACCCTGCTCCTTTTTCTGGAATCTCCGTCCCAG
Seq C2 exon
TATTTCAGTGACATCATCCACTCAGGAGAGTTGGGGCGAGGCTGGCTGAGGTTCTCAAGGAGCTGAGTTTTGAGTTCAGGTGCTCGTGTAGCAGTGGAATGATGCCTCCTGACCTTTCAGACCTTTGAGACCTCTGGGCGGTCTTAGAAATCACTTCAAGCCTCCAGTCCAGGATACGACTGCCTAGGGGAATTCCAGGGAAAGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX2-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.058 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCTCAGGATGAACTG
R:
TTTCTAAGACCGCCCAGAGGT
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development