HsaEX0001565 @ hg19
Exon Skipping
Gene
ENSG00000228214 | AC109586.1
Description
NA
Coordinates
chr3:28617764-28798732:+
Coord C1 exon
chr3:28617764-28617987
Coord A exon
chr3:28777500-28777654
Coord C2 exon
chr3:28798600-28798732
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTCTTTTAACAGTCA
3' ss Score
8.82
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCAGCCGCCGCCTCAGCAGCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG
Seq A exon
TCAGGCCACTCTTCCATAGGGCTGCTGCAGTTTGCTGGGGGTCTGCTTCAGACCCTAGTTGCCTCCATTTTTCCCATGCCTGGAGGTATCACCAGTGAAGCCTGCAAAACAGCAAAGATGGCACCCTGCTCCTTTTTCTGGAATCTCCGTCCCAG
Seq C2 exon
AGATGCCATGGACTACAAGGTGATGAATACCACTATGAGCTCACTACAAGATCTCAAAGATTTCAAGCCACTGGCTGTTACAAAGCATAAAGCCACCCTTCTGGAGCAGCGGCGGGAGGCAGGCTGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228214_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGATGGAGATGGATGT
R:
CATCACCTTGTAGTCCATGGCA
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)