HsaEX0001566 @ hg19
Exon Skipping
Gene
ENSG00000228214 | AC109586.1
Description
NA
Coordinates
chr3:28617764-28798732:+
Coord C1 exon
chr3:28617764-28617987
Coord A exon
chr3:28798249-28798459
Coord C2 exon
chr3:28798600-28798732
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTCTGTTATGTAGTAT
3' ss Score
6.19
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCAGCCGCCGCCTCAGCAGCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG
Seq A exon
TATTTCAGTGACATCATCCACTCAGGAGAGTTGGGGCGAGGCTGGCTGAGGTTCTCAAGGAGCTGAGTTTTGAGTTCAGGTGCTCGTGTAGCAGTGGAATGATGCCTCCTGACCTTTCAGACCTTTGAGACCTCTGGGCGGTCTTAGAAATCACTTCAAGCCTCCAGTCCAGGATACGACTGCCTAGGGGAATTCCAGGGAAAGGTGGCAG
Seq C2 exon
AGATGCCATGGACTACAAGGTGATGAATACCACTATGAGCTCACTACAAGATCTCAAAGATTTCAAGCCACTGGCTGTTACAAAGCATAAAGCCACCCTTCTGGAGCAGCGGCGGGAGGCAGGCTGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228214_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGGATGTTGAGGGAGT
R:
ATGCTTTGTAACAGCCAGTGG
Band lengths:
300-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)