RnoEX0004051 @ rn6
Exon Skipping
Gene
ENSRNOG00000053160 | AABR07071659.2
Description
NA
Coordinates
chr8:126082624-126249006:-
Coord C1 exon
chr8:126248906-126249006
Coord A exon
chr8:126082898-126083099
Coord C2 exon
chr8:126082624-126082754
Length
202 bp
Sequences
Splice sites
3' ss Seq
CATTTTGCTCTATTGTATAGTAT
3' ss Score
5.33
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AGCAGCAGCTGGCTCAGGATGAAGTGCCCAGCGAGAGTGCGGGCGCCGAGGACAGCGACGATCCGGAGGCGAGACCCAACGGCGAGAGGGGGGAGAGCAAG
Seq A exon
TATTCCAGTGACAGGATCCACTCAGGAGAGTTGGGGCCAAGGTTATCAAGGAGCTGAGTTCTGAGTTCAGGTGCCCACATGGCAGTGGAATGACGCCTCCTGGCCCTTCAGACCTTTGAGACAGCCGGGAGGCCCTAGAAATCACCTCAAGTCTCCAGTCCAGGACACAGCTGCCTAGGGGAGTCCCAGGGAAAGGCGGCAG
Seq C2 exon
AGATTGCATGGCCTGCAAGGTGATGGACTCCAACGTGACCACCTCGGAAACTACCAAACTCCAAGCCACTGGCAGTTCCAGCGCACAAAACCCCTTGCAGAGAGGAGGCGAGAGAAGCGAACTGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053160-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGCTCAGGATGAAG
R:
CTCCTCCCAGTTCGCTTCTCT
Band lengths:
228-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]