MmuEX1013616 @ mm10
Exon Skipping
Gene
ENSMUSG00000110408 | Gm45881
Description
predicted gene 45881 [Source:MGI Symbol;Acc:MGI:5804996]
Coordinates
chr9:117708362-117872584:-
Coord C1 exon
chr9:117872466-117872584
Coord A exon
chr9:117708638-117708839
Coord C2 exon
chr9:117708362-117708487
Length
202 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGCTCTATTGTATAGTAT
3' ss Score
6.29
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AGCCCCAGCCGCAGCCCCAGCAGCAGCTGGCTCAGGATGAAGTGCCCGGCGAGAGTGCGGGTGCTGAGGACAGCGACGATCCGGAGGCGAGACCCAATGGCGAGAGGGGGGAGAGCAAG
Seq A exon
TATTCCAGTGACAGAATCCACTCAAGAGAGTTGGGACCGAGGTTATCAAGGAGCTGAGTTCTGAGTTCAGGTGCCCACGTGGCAGAGGAATGACGCCTCCTGGCCCTTCAGACCTTTGAGACGGCCGGGAGGCCCTAGAAATCACCTCAAGTCTCCAGTCCAGGACACAGCTGCCTAGGGGAGTCCCAGGGAAAGGCGGCAG
Seq C2 exon
AGATTGCATGGCCCGTGGCGGACTCCAGCGCAACCTCTGCGGAATCTACCTGATTCCAAACCACTGGCACTTCCGGCGCGCAAAGCCCCTTGCGGAGAGGAGGCAAGAGAAGCCAGCTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000110408_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCTCAGGATGAAGTG
R:
CTTCCCAGCTGGCTTCTCTTG
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types