HsaALTD1027561-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr6:56900421-56953819:-
Coord C1 exon
chr6:56953785-56953819
Coord A exon
chr6:56953758-56953784
Coord C2 exon
chr6:56900421-56900621
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GGTTGTGTTTTCTGCCACAGGGA
3' ss Score
9.22
Exon sequences
Seq C1 exon
ATGCTGTTTTGAGATCGCACCACTTTCGTTCTGAG
Seq A exon
GTAATTTATTTAGCGCGCACGCTCAAG
Seq C2 exon
GGATTCAGAGCAAGCCCTCGGCATCTTAGAAGACGAGTTGCAGCGGCCGCAGCTGCCCGTCTGGAAGAAGTGAAGCCCGTGGTGGAAGTTCACCATCAGAGTGAGCAAGAAACTTCAGTGAGGAAACGAAGAATCAAGAAGAGCAGCCGAGTCCAGCCAGAATTTTATCACTCTGTTCAAGGTGCTTCAATCAGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914-2-5,3-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTTTGAGATCGCACCA
R:
GGGCTTCACTTCTTCCAGACG
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains