MmuALTD1012326-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:33908999-33968903:+
Coord C1 exon
chr1:33908999-33909033
Coord A exon
chr1:33909034-33909060
Coord C2 exon
chr1:33968703-33968903
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GTGTGTGTTTCCTGCCACAGGGG
3' ss Score
9.84
Exon sequences
Seq C1 exon
ATGCTGCTCTGAGATCTCATCACTTTCGCTCTGAG
Seq A exon
GTAATTTATTTAGCGCACACTCTCAAG
Seq C2 exon
GGGTTCCGAGCAAGCCCCCGACACATCAGGAGGCGAGTTGCAGCGGCCGCAGCTGCCCGGCTTGAAGAAGTGAAGCCTGTGGTGGAAGTCCATCATCAGAGTGAACAAGAGTCATCGGGGAGGAAGCGAAGGATCAAGAAAAACAGCCGGGTGCAGCCAGAATTCTATCACTCTGTTCAAGGTGCTTCCACCAGAAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-1-5,2-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTCTGAGATCTCATCAC
R:
GACTTCCACCACAGGCTTCAC
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types