GgaALTD1008264-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86250784-86267073:+
Coord C1 exon
chr3:86250784-86250818
Coord A exon
chr3:86250819-86250845
Coord C2 exon
chr3:86266885-86267073
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GATTGCTTTTCCTGTTGCAGGGC
3' ss Score
10.08
Exon sequences
Seq C1 exon
ATGCTGTCATGAGAACGCACCACTTTCGCTCTGAG
Seq A exon
GTAATTTATTTAGCACGCAATTTCAAG
Seq C2 exon
GGCTTTAGATCAAGTCCTCGTCATGCCAGAAGACGTGTAGCACCTCGCATTGAGGAAACACAGCCTTTAGTAGAAGCTCACCATCTAAGTGAGCAGGAAACCTCTGTAAGAAAAAGGAAAATCAAGAAAAGCAGCCGAGTGCAACCGGAATTTTATCATTCTGTTCAAGTGACTCCAACTCGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTCATGAGAACGCACC
R:
TGGTGAGCTTCTACTAAAGGCTG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]