GgaEX1021089 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86250417-86267073:+
Coord C1 exon
chr3:86250417-86250533
Coord A exon
chr3:86250784-86250818
Coord C2 exon
chr3:86266885-86267073
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTGCTTCCTTACAGATG
3' ss Score
11.73
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCCTGCTGCTGCTGGGTACCATCGCCACCATTCTATTCTTCTGCTGCTGGCACCGCAGGCTGCAGAAGGGCAGACACCCCATCAAATCCGTCTTCTCGGGCCGCTCGCGGAGCCGAG
Seq A exon
ATGCTGTCATGAGAACGCACCACTTTCGCTCTGAG
Seq C2 exon
GGCTTTAGATCAAGTCCTCGTCATGCCAGAAGACGTGTAGCACCTCGCATTGAGGAAACACAGCCTTTAGTAGAAGCTCACCATCTAAGTGAGCAGGAAACCTCTGTAAGAAAAAGGAAAATCAAGAAAAGCAGCCGAGTGCAACCGGAATTTTATCATTCTGTTCAAGTGACTCCAACTCGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGACACCCCATCAAATCC
R:
GGCTGTGTTTCCTCAATGCGA
Band lengths:
114-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]